Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015846603.1_cds_XP_016509729.1_22635
CDS Infomation

[gene=LOC107827160] [db_xref=GeneID:107827160] [protein=putative pentatricopeptide repeat-containing protein At1g02420] [protein_id=XP_016509729.1] [location=8054..9550] [gbkey=CDS]
Sequence

ATGGCTCGAATTTTCTCCTACAAACATCTCTCTATTGCCCCTCAAACGAACAGCCATTTT
CTTCCTTCTTCCCTCTACCTCCTCCATTCTCAATCCTCCGATTCCACTGACAAAGAAGTT
GAAACCCTTTACCGCATCATAACAATAACACAAACACCAGAGGGACTAAAACAATCGCTC
AAATCATCACAAATCAGCTTATCAAACGACTTAATTGATAGAGTTCTCAAAAGGGTACGT
TTTTCTCACTCCAACCCATTACAAGCTTTAGAGTTCTTTAAATTTGCAGCTAAGCGTAAA
GGGTTTTACCATACTGGCTTTTCTTTAGACACCATGTTGTATGTACTTGGTAGGAGTCGT
AAATTTGACAAGATTTGGGAGGTTTTAATAGAAATGAAGAGAAAAGATCAATCTTTAATA
ACGCCCCGAACAATTCAAGTTGTTTTGGGTAGAGTTGCTAAAGTTTGTTCAGTTAGGCAA
ACTGTTGAGGCTTTTTGGGGCTTCAAAAAACTGTTGAAAGAGTTTGGTGTTGATTGTTTC
AATGCATTGTTGAGGGCTTTGTGCCAGGAGAAGAGTATGAGTGATGCTAGGAATGTGTAC
CATAGCTTGAAATTTAAGTTTAGGCCAAATTTGCAAACTTTTAATATACTTTTGTCTGGT
TGGACATCGTCCGAGGATGCAGAGGGATTTTTTGATGAGATGAGGGATTTGGGTGTTGAA
CCGGATGTTGTTTCGTATAATTGTTTGGTGGATGTGTATTGTAAAGGGAGAGAGATGGAG
AAGGCGTTTAAGGTGGTGAAGGAGATGAGAGAGAAGGATATTACTCCCGATGTGATAACT
TATACGAGTTTAATTGGAGGGTTGGGATTGGTTGGACAACCCGATAAGGCGAGGGGTGTT
TTGAAGGATATGAGGGAGTATGGATGTTATCCGGATGCGGCAGCTTATAATGCTGCAATT
AGGAACTTCTGCATTGCGAAGAGGATTGGGGACGCATACAGTTTGATGGATGAGATGATA
ATGAATGGCTTGAGCCCCAACGCTACTACTTATAATGTGTTCTTAAGGTCATTTTTTTGG
GCAAATGATTTGAGAAGTTCGTGGTCTTTGTACCAGAGGATGAAGGAGACTTGGTGCTTA
CCGAGTACACAGTCATGTATGTTTTTGATCAGGTTGATCAGGAGACACGATAAGGTGGAG
ATGGCACTTGAGTTGTGGGATGACATGGTGGTGAGAGGATTCGGCTCGTATATTTTAGTG
TCTGATGTTTTGTTTGATTTGCTTTGTGATCTGGGAAAATTGGCGGAGGCAGAACGATGT
TTCTTGCAAATGGTGGATAAAGGGCAAAAGCCAAGTAATGTTTCTTTTAGGAGGATCAAG
GTGCTTATGGAATTGGCTAATAAACAGGAAGCCCTTAAGCTTTTGTCAGAAAAGATGGCT
TCTTTTGGTTCCTCCACCCAACTGATCCAAGAGGATAAAGTGGAATATGATTTATGA

Peptide Sequence

PEP ID

XP_016509729.1
PEP Infomation

PREDICTED: putative pentatricopeptide repeat-containing protein At1g02420 [Nicotiana tabacum]
Sequence

MARIFSYKHLSIAPQTNSHFLPSSLYLLHSQSSDSTDKEVETLYRIITITQTPEGLKQSL
KSSQISLSNDLIDRVLKRVRFSHSNPLQALEFFKFAAKRKGFYHTGFSLDTMLYVLGRSR
KFDKIWEVLIEMKRKDQSLITPRTIQVVLGRVAKVCSVRQTVEAFWGFKKLLKEFGVDCF
NALLRALCQEKSMSDARNVYHSLKFKFRPNLQTFNILLSGWTSSEDAEGFFDEMRDLGVE
PDVVSYNCLVDVYCKGREMEKAFKVVKEMREKDITPDVITYTSLIGGLGLVGQPDKARGV
LKDMREYGCYPDAAAYNAAIRNFCIAKRIGDAYSLMDEMIMNGLSPNATTYNVFLRSFFW
ANDLRSSWSLYQRMKETWCLPSTQSCMFLIRLIRRHDKVEMALELWDDMVVRGFGSYILV
SDVLFDLLCDLGKLAEAERCFLQMVDKGQKPSNVSFRRIKVLMELANKQEALKLLSEKMA
SFGSSTQLIQEDKVEYDL

Transcript Sequence

Gene sequence data has not been registered.